CONP Portal | Dataset
Alzheimer’s mouse models dataset
Is About: | Mus musculus |
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Acknowledges: | Weston Brain Institute, Canada First Research Excellence Fund, Canadian Open Neuroscience Platform |
Description:
Dataset README information
Weston-Project: Alzheimer’s mouse models dataset
This dataset has data files from 5-Choice, Pairwise Visual Discrimination (PVD), and Paired-Associates Learning (PAL) cognitive behavioral tasks in which male and female mice from 3 Alzheimer’s mouse models (3xTG-AD, 5XFAD, APP/PS1) were tested using touchscreen technology at two different sites (e.g. University of Western Ontario and University of Guelph). Both aggregated data and trial-by-trial data are provided in this dataset.
COMMON METADATA:
Dataset type: Cognitive Behavioral Data from Touchscreen Technology
Source: https://mousebytes.ca
DOI: https://doi.org/10.7554/eLife.49630
Animal Specie: Mouse
Animal Sex: Female, Male
Animal age (month): "3-6", "7-10", "11-14"
Animal strain: 3xTG-AD, 5XFAD, APP/PS1
Animal Genotype: 3xTG-AD, 5XFAD, APP/PS1, B6129SF2/J, B6SJLF1/J, C57BL/6J
Housing: Single-housed
Light Cycle: Diurnal light cycle
Intervention: N/A
AGGREGATED DATA:
File Name: FB_AD_5Choice.csv
PI: Dr. Marco Prado, Robarts Research Institute (University of Western Ontario)
Data Link: https://mousebytes.ca/data-link?linkguid=3e55d56e-08e1-431b-98e9-f649db1a6ce5
Cognitive Task: 5_Choice
Aggregation Function: Mean
Trial by Trial: No
File Name: DP_AD_5Choice.csv
PI: Dr. Boyer Winters, University of Guelph
Data Link: https://mousebytes.ca/data-link?linkguid=f076dc4d-7c9a-48cb-a361-36c7315d0e7e
Cognitive Task: 5_Choice
Aggregation Function: Mean
Trial by Trial: No
File Name: FB_AD_PD.csv
PI: Dr. Marco Prado, Robarts Research Institute (University of Western Ontario)
Data Link: https://mousebytes.ca/data-link?linkguid=0e45db27-70f6-4702-8ddd-8865c6f2d4d5
Cognitive Task: Pairwise Visual Discrimination (PVD)
Aggregation Function: Mean
Trial by Trial: No
File Name: DP_AD_PD.csv
PI: Dr. Boyer Winters, University of Guelph
Data Link: https://mousebytes.ca/data-link?linkguid=b1fa03d7-8d41-49c9-8962-86894078b8c6
Cognitive Task: Pairwise Visual Discrimination (PVD)
Aggregation Function: Mean
Trial by Trial: No
File Name: FB_AD_PAL_Analysis.csv
PI: Dr. Marco Prado, Robarts Research Institute (University of Western Ontario)
Data Link: https://mousebytes.ca/data-link?linkguid=1c3c90f7-020f-42cf-837b-fe1d00a13e54
Cognitive Task: Paired-Associates Learning (PAL), Analysis
Aggregation Function: Mean
Trial by Trial: No
File Name: FB_AD_PAL_Acquisition.csv
PI: Dr. Marco Prado, Robarts Research Institute (University of Western Ontario)
Data Link: https://mousebytes.ca/data-link?linkguid=55ba0822-b8b0-409f-96e9-85aa94f4a0b2
Cognitive Task: Paired-Associates Learning (PAL), Acquisition
Aggregation Function: Mean
Trial by Trial: No
File Name: DP_AD_PAL_Analysis.csv
PI: Dr. Boyer Winters, University of Guelph
Data Link: https://mousebytes.ca/data-link?linkguid=3894eb3e-fe07-4898-a5cc-f2619a3873c5
Cognitive Task: Task: Paired-Associates Learning (PAL), Analysis
Aggregation Function: Mean
Trial by Trial: No
File Name: DP_AD_PAL_Acquisition.csv
PI: Dr. Boyer Winters, University of Guelph
Data Link: https://mousebytes.ca/data-link?linkguid=8c01c6bb-f0fe-4393-b34f-37e2c39c0151
Cognitive Task: Task: Paired-Associates Learning (PAL), Acquisition
Aggregation Function: Mean
Trial by Trial: No
TRIAL BY TRIAL DATA:
File Name: FB_AD_5Choice_Trial.csv
PI: Dr. Marco Prado, Robarts Research Institute (University of Western Ontario)
Data Link: https://mousebytes.ca/data-link?linkguid=50fcdb9c-d064-413a-8b1e-7a3dc6fc2636
Cognitive Task: 5_Choice
Aggregation Function: N/A
Trial by Trial: Yes
File Name: DP_AD_5Choice_Trial.csv
PI: Dr. Boyer Winters, University of Guelph
Data Link: https://mousebytes.ca/data-link?linkguid=24ebbc94-7673-49e1-92c1-031e84d418c3
Cognitive Task: 5_Choice
Aggregation Function: N/A
Trial by Trial: Yes
File Name: FB_AD_PD_Trial.csv
PI: Dr. Marco Prado, Robarts Research Institute (University of Western Ontario)
Data Link: https://mousebytes.ca/data-link?linkguid=ca83d7bd-9551-4fe8-819e-1c7a4f4e4d22
Cognitive Task: Pairwise Visual Discrimination (PVD)
Aggregation Function: N/A
Trial by Trial: Yes
File Name: DP_AD_PD_Trial.csv
PI: Dr. Boyer Winters, University of Guelph
Data Link: https://mousebytes.ca/data-link?linkguid=950d287f-1a7f-4c02-a7e9-bc1deae7c150
Cognitive Task: Pairwise Visual Discrimination (PVD)
Aggregation Function: N/A
Trial by Trial: Yes
File Name: FB_AD_PAL_Analysis_Trial.csv
PI: Dr. Marco Prado, Robarts Research Institute (University of Western Ontario)
Data Link: https://mousebytes.ca/data-link?linkguid=156bbe12-6cc2-410c-96dd-d9f5e559d7c0
Cognitive Task: Paired-Associates Learning (PAL), Analysis
Aggregation Function: N/A
Trial by Trial: Yes
File Name: FB_AD_PAL_Acquisition_Trial.csv
PI: Dr. Marco Prado, Robarts Research Institute (University of Western Ontario)
Data Link: https://mousebytes.ca/data-link?linkguid=cc2c457a-17aa-4fed-803f-f00529d417c5
Cognitive Task: Paired-Associates Learning (PAL), Acquisition
Aggregation Function: N/A
Trial by Trial: Yes
File Name: DP_AD_PAL_Analysis_Trial.csv
PI: Dr. Marco Prado, Robarts Research Institute (University of Western Ontario)
Data Link: https://mousebytes.ca/data-link?linkguid=642667b6-e933-43fb-89b6-711b069fea5e
Cognitive Task: Paired-Associates Learning (PAL), Analysis
Aggregation Function: N/A
Trial by Trial: Yes
File Name: DP_AD_PAL_Acquisition_Trial.csv
PI: Dr. Marco Prado, Robarts Research Institute (University of Western Ontario)
Data Link: https://mousebytes.ca/data-link?linkguid=c0e7524e-5c35-4226-bf08-ba6403339c87
Cognitive Task: Paired-Associates Learning (PAL), Acquisition
Aggregation Function: N/A
Trial by Trial: Yes
The following instructions require a basic understanding of UNIX/LINUX command lines. A subset of open datasets on the Portal are also available through a browser-based download button. The instructions below regard dataset download with the use of DataLad. To install DataLad on your system, please refer to the install section of the DataLad Handbook .
Note: For maximum compatibility with conp-dataset
, the CONP recommends versions 3.12+ of Python, 10.20241202+ of git-annex, and 1.1.4+ of datalad.
1) Initiate the CONP dataset
Run the following command in the directory where you want the CONP dataset (conp-dataset
) to be installed:
2) Install the mousebytesdataset dataset
To install the mousebytesdataset
dataset, run the following commands to move into the "projects" subdirectory under the "conp-dataset" directory (created in the previous step) and run datalad install
:
3) Download data from the mousebytesdataset dataset
Now that the dataset has been installed, go into the mousebytesdataset
dataset directory.
The files visible after installing the dataset but before downloading (in the next step) are symbolic links and need to be downloaded manually using the datalad get
command:
If you run datalad get *
command, all the files available in the dataset directory will be downloaded.